intan package¶
Subpackages¶
- intan.applications package
- Submodules
save_model_obj()load_model_obj()save_trials_csv()load_trials_csv()save_features_npz()load_features_npz()EMGViewerTkEMGViewerTk.build_layout()EMGViewerTk.build_acquisition_tab()EMGViewerTk.build_trials_tab()EMGViewerTk.build_filtering_tab()EMGViewerTk.build_training_tab()EMGViewerTk.add_feature_directory()EMGViewerTk.add_training_directory()EMGViewerTk.apply_visualization_filters()EMGViewerTk.copy_display_to_training_filters()EMGViewerTk.load_feature_segments()EMGViewerTk.load_segment_and_visualize()EMGViewerTk.load_file()EMGViewerTk.update_training_labels_from_directory()EMGViewerTk.remove_training_directory()EMGViewerTk.remove_selected_label()EMGViewerTk.visualize_selected_segment()EMGViewerTk.run_pca_visualization()EMGViewerTk.refresh_labels_list()EMGViewerTk.update_training_labels_from_filename()EMGViewerTk.run_trial_segmentation()EMGViewerTk.enable_indexing()EMGViewerTk.scroll_plot()EMGViewerTk.on_click()EMGViewerTk.save_table()EMGViewerTk.parse_channel_range()EMGViewerTk.load_table()EMGViewerTk.delete_selected()EMGViewerTk.update_channel()EMGViewerTk.plot_channel()EMGViewerTk.extract_features_from_directories()EMGViewerTk.extract_td_features()EMGViewerTk.apply_training_filters()EMGViewerTk.add_scalebars()EMGViewerTk.insert_channel_labels()EMGViewerTk.insert_vertical_labels()EMGViewerTk.build_training_dataset()EMGViewerTk.waterfall_gui_plot()EMGViewerTk.on_closing()
EMGViewerEMGTrialSelectorEMGTrialSelector.emg_dataEMGTrialSelector.time_vectorEMGTrialSelector.sampling_rateEMGTrialSelector.current_channelEMGTrialSelector.indexing_enabledEMGTrialSelector.load_file()EMGTrialSelector.append_file()EMGTrialSelector.sample_index_to_timestamp()EMGTrialSelector.save_table()EMGTrialSelector.delete_selected()EMGTrialSelector.extract_edges()EMGTrialSelector.clear_indices()EMGTrialSelector.update_channel()EMGTrialSelector.enable_indexing()EMGTrialSelector.on_click()EMGTrialSelector.plot_channel()EMGTrialSelector.on_closing()
launch_emg_viewer()launch_emg_trial_selector()
- Submodules
- intan.decomposition package
- intan.interface package
- intan.io package
- Submodules
canonical_label()load_csv_file()find_csv_dir()load_csv_files()UnrecognizedFileErrorUnknownChannelTypeErrorFileSizeErrorQStringErrorChannelNotFoundErrorGetSampleRateFailureInvalidReceivedDataSizeInvalidMagicNumberadjust_path()check_file_present()check_end_of_file()print_progress()read_config_file()get_file_paths()load_labeled_file()load_txt_config()load_yaml_file()load_json_file()load_config_file()labels_from_events()last_event_index()stem_without_timestamp()glob_first()find_event_file()discover_data_files()find_dataset_file()list_npz_files()find_npz_by_label()load_npz_record()save_as_npz()save_as_npz_compressed()load_npz_file()load_npz_files()load_training_dataset()load_and_merge_datasets()save_training_dataset()read_uint32()read_int32()read_uint16()get_timestamp_signed()read_one_data_block()read_timestamps()read_analog_signals()read_digital_signals()read_analog_signal_type()read_digital_signal_type()read_all_data_blocks()initialize_memory()advance_indices()plural()print_all_channel_names()print_names_in_group()find_channel_in_group()find_channel_in_header()read_header()read_qstring()read_notes()read_version_number()check_magic_number()read_notch_filter_frequency()read_channel_structure()read_num_temp_sensor_channels()read_sample_rate()read_freq_settings()read_impedance_test_frequencies()read_eval_board_mode()read_reference_channel()read_new_channel()append_new_channel()add_num_channels()set_num_samples_per_data_block()set_sample_rates()set_frequency_parameters()initialize_channels()add_signal_group_information()add_channel_information()header_to_result()print_header_summary()data_to_result()plural()get_bytes_per_data_block()bytes_per_signal_type()calculate_data_size()calculate_num_samples()print_record_time_summary()load_rhd_file()read_time_file()read_amplifier_file()read_auxiliary_file()read_adc_file()load_dat_file()load_per_signal_files()load_files_from_path()apply_notch_filter()parse_data()scale_timestamps()scale_analog_data()extract_digital_data()parse_event_file()parse_numeric_args()convert_events_to_list()lock_params_to_meta()load_metadata_json()normalize_name()build_indices_from_mapping()align_channels_by_name()select_training_channels_by_name()trained_channel_names_from_meta()trained_channel_names_from_dataset_npz()get_trained_channel_names()parse_channel_spec()load_channel_mapping()resolve_channel_selection()normalize_channel_name_1based()parse_channels_spec()discover_and_group_files()load_single_file()load_files_merged()file_stem()find_event_for_file()
- Submodules
- intan.ml package
- intan.plotting package
- intan.processing package
preprocess_emg()parse_channel_ranges()notch_filter()lowpass_filter()bandpass_filter()filter_emg()process_emg_pipeline()sliding_window()orthogonalize()normalize()rectify()window_rms()window_rms_1D()calculate_rms()compute_rolling_rms()downsample()common_average_reference()envelope_extraction()z_score_norm()compute_rms()compute_grid_average()variance()mean_absolute_value()zero_crossings()integrated_emg()slope_sign_changes()waveform_length()root_mean_square()extract_features()extract_features_sliding_window()feature_spec_from_registry()load_metrics_data()get_metrics_file()
- intan.samples package
Module contents¶
Intan: Python interface for reading, processing, and visualizing data from Intan Technologies’ RHD2000 and RHS2000 acquisition systems.
This package includes modules for: - Reading and parsing .rhd and .rhs files - Streamed acquisition via TCP/IP from the Intan RHX software - Visualization of high-density EMG or LFP signals - Configuration and device control
